Send output to:
Browser Blue - Charts White
Browser Black/White
CSV
Data X:
210907 56 396 81 3 79 30 120982 56 297 55 4 58 28 176508 54 559 50 12 60 38 179321 89 967 125 2 108 30 123185 40 270 40 1 49 22 52746 25 143 37 3 0 26 385534 92 1562 63 0 121 25 33170 18 109 44 0 1 18 101645 63 371 88 0 20 11 149061 44 656 66 5 43 26 165446 33 511 57 0 69 25 237213 84 655 74 0 78 38 173326 88 465 49 7 86 44 133131 55 525 52 7 44 30 258873 60 885 88 3 104 40 180083 66 497 36 9 63 34 324799 154 1436 108 0 158 47 230964 53 612 43 4 102 30 236785 119 865 75 3 77 31 135473 41 385 32 0 82 23 202925 61 567 44 7 115 36 215147 58 639 85 0 101 36 344297 75 963 86 1 80 30 153935 33 398 56 5 50 25 132943 40 410 50 7 83 39 174724 92 966 135 0 123 34 174415 100 801 63 0 73 31 225548 112 892 81 5 81 31 223632 73 513 52 0 105 33 124817 40 469 44 0 47 25 221698 45 683 113 0 105 33 210767 60 643 39 3 94 35 170266 62 535 73 4 44 42 260561 75 625 48 1 114 43 84853 31 264 33 4 38 30 294424 77 992 59 2 107 33 101011 34 238 41 0 30 13 215641 46 818 69 0 71 32 325107 99 937 64 0 84 36 7176 17 70 1 0 0 0 167542 66 507 59 2 59 28 106408 30 260 32 1 33 14 96560 76 503 129 0 42 17 265769 146 927 37 2 96 32 269651 67 1269 31 10 106 30 149112 56 537 65 6 56 35 175824 107 910 107 0 57 20 152871 58 532 74 5 59 28 111665 34 345 54 4 39 28 116408 61 918 76 1 34 39 362301 119 1635 715 2 76 34 78800 42 330 57 2 20 26 183167 66 557 66 0 91 39 277965 89 1178 106 8 115 39 150629 44 740 54 3 85 33 168809 66 452 32 0 76 28 24188 24 218 20 0 8 4
Names of X columns:
time_in_rfc logins compendium_views_info compendium_views_pr shared_compendiums blogged_computations compendiums_reviewed
Endogenous Variable (Column Number)
Categorization
none
none
quantiles
hclust
equal
Number of categories (only if categorization<>none)
Cross-Validation? (only if categorization<>none)
no
no
yes
Chart options
R Code
library(party) library(Hmisc) par1 <- as.numeric(par1) par3 <- as.numeric(par3) x <- data.frame(t(y)) is.data.frame(x) x <- x[!is.na(x[,par1]),] k <- length(x[1,]) n <- length(x[,1]) colnames(x)[par1] x[,par1] if (par2 == 'kmeans') { cl <- kmeans(x[,par1], par3) print(cl) clm <- matrix(cbind(cl$centers,1:par3),ncol=2) clm <- clm[sort.list(clm[,1]),] for (i in 1:par3) { cl$cluster[cl$cluster==clm[i,2]] <- paste('C',i,sep='') } cl$cluster <- as.factor(cl$cluster) print(cl$cluster) x[,par1] <- cl$cluster } if (par2 == 'quantiles') { x[,par1] <- cut2(x[,par1],g=par3) } if (par2 == 'hclust') { hc <- hclust(dist(x[,par1])^2, 'cen') print(hc) memb <- cutree(hc, k = par3) dum <- c(mean(x[memb==1,par1])) for (i in 2:par3) { dum <- c(dum, mean(x[memb==i,par1])) } hcm <- matrix(cbind(dum,1:par3),ncol=2) hcm <- hcm[sort.list(hcm[,1]),] for (i in 1:par3) { memb[memb==hcm[i,2]] <- paste('C',i,sep='') } memb <- as.factor(memb) print(memb) x[,par1] <- memb } if (par2=='equal') { ed <- cut(as.numeric(x[,par1]),par3,labels=paste('C',1:par3,sep='')) x[,par1] <- as.factor(ed) } table(x[,par1]) colnames(x) colnames(x)[par1] x[,par1] if (par2 == 'none') { m <- ctree(as.formula(paste(colnames(x)[par1],' ~ .',sep='')),data = x) } load(file='createtable') if (par2 != 'none') { m <- ctree(as.formula(paste('as.factor(',colnames(x)[par1],') ~ .',sep='')),data = x) if (par4=='yes') { a<-table.start() a<-table.row.start(a) a<-table.element(a,'10-Fold Cross Validation',3+2*par3,TRUE) a<-table.row.end(a) a<-table.row.start(a) a<-table.element(a,'',1,TRUE) a<-table.element(a,'Prediction (training)',par3+1,TRUE) a<-table.element(a,'Prediction (testing)',par3+1,TRUE) a<-table.row.end(a) a<-table.row.start(a) a<-table.element(a,'Actual',1,TRUE) for (jjj in 1:par3) a<-table.element(a,paste('C',jjj,sep=''),1,TRUE) a<-table.element(a,'CV',1,TRUE) for (jjj in 1:par3) a<-table.element(a,paste('C',jjj,sep=''),1,TRUE) a<-table.element(a,'CV',1,TRUE) a<-table.row.end(a) for (i in 1:10) { ind <- sample(2, nrow(x), replace=T, prob=c(0.9,0.1)) m.ct <- ctree(as.formula(paste('as.factor(',colnames(x)[par1],') ~ .',sep='')),data =x[ind==1,]) if (i==1) { m.ct.i.pred <- predict(m.ct, newdata=x[ind==1,]) m.ct.i.actu <- x[ind==1,par1] m.ct.x.pred <- predict(m.ct, newdata=x[ind==2,]) m.ct.x.actu <- x[ind==2,par1] } else { m.ct.i.pred <- c(m.ct.i.pred,predict(m.ct, newdata=x[ind==1,])) m.ct.i.actu <- c(m.ct.i.actu,x[ind==1,par1]) m.ct.x.pred <- c(m.ct.x.pred,predict(m.ct, newdata=x[ind==2,])) m.ct.x.actu <- c(m.ct.x.actu,x[ind==2,par1]) } } print(m.ct.i.tab <- table(m.ct.i.actu,m.ct.i.pred)) numer <- 0 for (i in 1:par3) { print(m.ct.i.tab[i,i] / sum(m.ct.i.tab[i,])) numer <- numer + m.ct.i.tab[i,i] } print(m.ct.i.cp <- numer / sum(m.ct.i.tab)) print(m.ct.x.tab <- table(m.ct.x.actu,m.ct.x.pred)) numer <- 0 for (i in 1:par3) { print(m.ct.x.tab[i,i] / sum(m.ct.x.tab[i,])) numer <- numer + m.ct.x.tab[i,i] } print(m.ct.x.cp <- numer / sum(m.ct.x.tab)) for (i in 1:par3) { a<-table.row.start(a) a<-table.element(a,paste('C',i,sep=''),1,TRUE) for (jjj in 1:par3) a<-table.element(a,m.ct.i.tab[i,jjj]) a<-table.element(a,round(m.ct.i.tab[i,i]/sum(m.ct.i.tab[i,]),4)) for (jjj in 1:par3) a<-table.element(a,m.ct.x.tab[i,jjj]) a<-table.element(a,round(m.ct.x.tab[i,i]/sum(m.ct.x.tab[i,]),4)) a<-table.row.end(a) } a<-table.row.start(a) a<-table.element(a,'Overall',1,TRUE) for (jjj in 1:par3) a<-table.element(a,'-') a<-table.element(a,round(m.ct.i.cp,4)) for (jjj in 1:par3) a<-table.element(a,'-') a<-table.element(a,round(m.ct.x.cp,4)) a<-table.row.end(a) a<-table.end(a) table.save(a,file='mytable3.tab') } } m bitmap(file='test1.png') plot(m) dev.off() bitmap(file='test1a.png') plot(x[,par1] ~ as.factor(where(m)),main='Response by Terminal Node',xlab='Terminal Node',ylab='Response') dev.off() if (par2 == 'none') { forec <- predict(m) result <- as.data.frame(cbind(x[,par1],forec,x[,par1]-forec)) colnames(result) <- c('Actuals','Forecasts','Residuals') print(result) } if (par2 != 'none') { print(cbind(as.factor(x[,par1]),predict(m))) myt <- table(as.factor(x[,par1]),predict(m)) print(myt) } bitmap(file='test2.png') if(par2=='none') { op <- par(mfrow=c(2,2)) plot(density(result$Actuals),main='Kernel Density Plot of Actuals') plot(density(result$Residuals),main='Kernel Density Plot of Residuals') plot(result$Forecasts,result$Actuals,main='Actuals versus Predictions',xlab='Predictions',ylab='Actuals') plot(density(result$Forecasts),main='Kernel Density Plot of Predictions') par(op) } if(par2!='none') { plot(myt,main='Confusion Matrix',xlab='Actual',ylab='Predicted') } dev.off() if (par2 == 'none') { detcoef <- cor(result$Forecasts,result$Actuals) a<-table.start() a<-table.row.start(a) a<-table.element(a,'Goodness of Fit',2,TRUE) a<-table.row.end(a) a<-table.row.start(a) a<-table.element(a,'Correlation',1,TRUE) a<-table.element(a,round(detcoef,4)) a<-table.row.end(a) a<-table.row.start(a) a<-table.element(a,'R-squared',1,TRUE) a<-table.element(a,round(detcoef*detcoef,4)) a<-table.row.end(a) a<-table.row.start(a) a<-table.element(a,'RMSE',1,TRUE) a<-table.element(a,round(sqrt(mean((result$Residuals)^2)),4)) a<-table.row.end(a) a<-table.end(a) table.save(a,file='mytable1.tab') a<-table.start() a<-table.row.start(a) a<-table.element(a,'Actuals, Predictions, and Residuals',4,TRUE) a<-table.row.end(a) a<-table.row.start(a) a<-table.element(a,'#',header=TRUE) a<-table.element(a,'Actuals',header=TRUE) a<-table.element(a,'Forecasts',header=TRUE) a<-table.element(a,'Residuals',header=TRUE) a<-table.row.end(a) for (i in 1:length(result$Actuals)) { a<-table.row.start(a) a<-table.element(a,i,header=TRUE) a<-table.element(a,result$Actuals[i]) a<-table.element(a,result$Forecasts[i]) a<-table.element(a,result$Residuals[i]) a<-table.row.end(a) } a<-table.end(a) table.save(a,file='mytable.tab') } if (par2 != 'none') { a<-table.start() a<-table.row.start(a) a<-table.element(a,'Confusion Matrix (predicted in columns / actuals in rows)',par3+1,TRUE) a<-table.row.end(a) a<-table.row.start(a) a<-table.element(a,'',1,TRUE) for (i in 1:par3) { a<-table.element(a,paste('C',i,sep=''),1,TRUE) } a<-table.row.end(a) for (i in 1:par3) { a<-table.row.start(a) a<-table.element(a,paste('C',i,sep=''),1,TRUE) for (j in 1:par3) { a<-table.element(a,myt[i,j]) } a<-table.row.end(a) } a<-table.end(a) table.save(a,file='mytable2.tab') }
Compute
Summary of computational transaction
Raw Input
view raw input (R code)
Raw Output
view raw output of R engine
Computing time
2 seconds
R Server
Big Analytics Cloud Computing Center
Click here to blog (archive) this computation