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Data:
1.894 1.757 3.582 5.321 5.561 5.907 4.944 4.966 3.258 1.964 1.743 1.262 2.086 1.793 3.548 5.672 6.084 4.914 4.990 5.139 3.218 2.179 2.238 1.442 2.205 2.025 3.531 4.977 7.998 4.880 5.231 5.202 3.303 2.683 2.202 1.376 2.422 1.997 3.163 5.964 5.657 6.415 6.208 4.500 2.939 2.702 2.090 1.504 2.549 1.931 3.013 6.204 5.788 5.611 5.594 4.647 3.490 2.487 1.992 1.507 2.306 2.002 3.075 5.331 5.589 5.813 4.876 4.665 3.601 2.192 2.111 1.580 2.288 1.993 3.228 5.000 5.480 5.770 4.962 4.685 3.607 2.222 2.467 1.594 2.228 1.910 3.157 4.809 6.249 4.607 4.975 4.784 3.028 2.461 2.218 1.351 2.070 1.887 3.024 4.596 6.398 4.459 5.382 4.359 2.687 2.249 2.154 1.169 2.429 1.762 2.846 5.627 5.749 4.502 5.720 4.403 2.867 2.635 2.059 1.511 2.359 1.741 2.917 6.249 5.760 6.250 5.134 4.831 3.695 2.462 2.146 1.579
Include mean?
0:1-0:011121211TRUETRUETRUETRUE12DefaultDefault-0.3FALSE12greytwo.sidedtwo.sidedtwo.sidedtwo.sidedtwo.sidedtwo.sidedgreygreygreygrey11FALSEFALSEFALSEFALSEFALSEFALSE121111200two.sidedtwo.sidedFALSE
FALSE
TRUE
Box-Cox lambda transformation parameter (lambda)
11-02001111-0.3-0.30-0.3-0.3Do not include Seasonal Dummiesno0.950,990,990,990.99noyesyesno22-0.3-0.3-0.3-0.3-0.3-0.3-0.3Do not include Seasonal DummiesDo not include Seasonal DummiesDo not include Seasonal DummiesDo not include Seasonal Dummies50.990.95-0.3
1
-2.0
-1.9
-1.8
-1.7
-1.6
-1.5
-1.4
-1.3
-1.2
-1.1
-1.0
-0.9
-0.8
-0.7
-0.6
-0.5
-0.4
-0.3
-0.2
-0.1
0.0
0.1
0.2
0.3
0.4
0.5
0.6
0.7
0.8
0.9
1.0
1.1
1.2
1.3
1.4
1.5
1.6
1.7
1.8
1.9
2.0
Degree of non-seasonal differencing (d)
20Exact Pearson Chi-Squared by Simulation11000001100No Linear Trend20151515153Exact Pearson Chi-Squared by Simulation0000000No Linear TrendNo Linear TrendNo Linear TrendNo Linear Trend015150
0
1
2
Degree of seasonal differencing (D)
TRUETRUE1211111111211TRUE111111100P1 P5 Q1 Q3 P95 P991
0
1
Seasonal Period (s)
1212121212121212121212121212120012
1
2
3
4
6
12
Maximum AR(p) order
3333White NoiseWhite Noise33123332333121212123
0
1
2
3
Maximum MA(q) order
11110.950.951011100100
0
1
Maximum SAR(P) order
22222221002222
0
1
2
Maximum SMA(Q) order
11111010000100
0
1
Chart options
R Code
library(lattice) if (par1 == 'TRUE') par1 <- TRUE if (par1 == 'FALSE') par1 <- FALSE par2 <- as.numeric(par2) #Box-Cox lambda transformation parameter par3 <- as.numeric(par3) #degree of non-seasonal differencing par4 <- as.numeric(par4) #degree of seasonal differencing par5 <- as.numeric(par5) #seasonal period par6 <- as.numeric(par6) #degree (p) of the non-seasonal AR(p) polynomial par7 <- as.numeric(par7) #degree (q) of the non-seasonal MA(q) polynomial par8 <- as.numeric(par8) #degree (P) of the seasonal AR(P) polynomial par9 <- as.numeric(par9) #degree (Q) of the seasonal MA(Q) polynomial armaGR <- function(arima.out, names, n){ try1 <- arima.out$coef try2 <- sqrt(diag(arima.out$var.coef)) try.data.frame <- data.frame(matrix(NA,ncol=4,nrow=length(names))) dimnames(try.data.frame) <- list(names,c('coef','std','tstat','pv')) try.data.frame[,1] <- try1 for(i in 1:length(try2)) try.data.frame[which(rownames(try.data.frame)==names(try2)[i]),2] <- try2[i] try.data.frame[,3] <- try.data.frame[,1] / try.data.frame[,2] try.data.frame[,4] <- round((1-pt(abs(try.data.frame[,3]),df=n-(length(try2)+1)))*2,5) vector <- rep(NA,length(names)) vector[is.na(try.data.frame[,4])] <- 0 maxi <- which.max(try.data.frame[,4]) continue <- max(try.data.frame[,4],na.rm=TRUE) > .05 vector[maxi] <- 0 list(summary=try.data.frame,next.vector=vector,continue=continue) } arimaSelect <- function(series, order=c(13,0,0), seasonal=list(order=c(2,0,0),period=12), include.mean=F){ nrc <- order[1]+order[3]+seasonal$order[1]+seasonal$order[3] coeff <- matrix(NA, nrow=nrc*2, ncol=nrc) pval <- matrix(NA, nrow=nrc*2, ncol=nrc) mylist <- rep(list(NULL), nrc) names <- NULL if(order[1] > 0) names <- paste('ar',1:order[1],sep='') if(order[3] > 0) names <- c( names , paste('ma',1:order[3],sep='') ) if(seasonal$order[1] > 0) names <- c(names, paste('sar',1:seasonal$order[1],sep='')) if(seasonal$order[3] > 0) names <- c(names, paste('sma',1:seasonal$order[3],sep='')) arima.out <- arima(series, order=order, seasonal=seasonal, include.mean=include.mean, method='ML') mylist[[1]] <- arima.out last.arma <- armaGR(arima.out, names, length(series)) mystop <- FALSE i <- 1 coeff[i,] <- last.arma[[1]][,1] pval [i,] <- last.arma[[1]][,4] i <- 2 aic <- arima.out$aic while(!mystop){ mylist[[i]] <- arima.out arima.out <- arima(series, order=order, seasonal=seasonal, include.mean=include.mean, method='ML', fixed=last.arma$next.vector) aic <- c(aic, arima.out$aic) last.arma <- armaGR(arima.out, names, length(series)) mystop <- !last.arma$continue coeff[i,] <- last.arma[[1]][,1] pval [i,] <- last.arma[[1]][,4] i <- i+1 } list(coeff, pval, mylist, aic=aic) } arimaSelectplot <- function(arimaSelect.out,noms,choix){ noms <- names(arimaSelect.out[[3]][[1]]$coef) coeff <- arimaSelect.out[[1]] k <- min(which(is.na(coeff[,1])))-1 coeff <- coeff[1:k,] pval <- arimaSelect.out[[2]][1:k,] aic <- arimaSelect.out$aic[1:k] coeff[coeff==0] <- NA n <- ncol(coeff) if(missing(choix)) choix <- k layout(matrix(c(1,1,1,2, 3,3,3,2, 3,3,3,4, 5,6,7,7),nr=4), widths=c(10,35,45,15), heights=c(30,30,15,15)) couleurs <- rainbow(75)[1:50]#(50) ticks <- pretty(coeff) par(mar=c(1,1,3,1)) plot(aic,k:1-.5,type='o',pch=21,bg='blue',cex=2,axes=F,lty=2,xpd=NA) points(aic[choix],k-choix+.5,pch=21,cex=4,bg=2,xpd=NA) title('aic',line=2) par(mar=c(3,0,0,0)) plot(0,axes=F,xlab='',ylab='',xlim=range(ticks),ylim=c(.1,1)) rect(xleft = min(ticks) + (0:49)/50*(max(ticks)-min(ticks)), xright = min(ticks) + (1:50)/50*(max(ticks)-min(ticks)), ytop = rep(1,50), ybottom= rep(0,50),col=couleurs,border=NA) axis(1,ticks) rect(xleft=min(ticks),xright=max(ticks),ytop=1,ybottom=0) text(mean(coeff,na.rm=T),.5,'coefficients',cex=2,font=2) par(mar=c(1,1,3,1)) image(1:n,1:k,t(coeff[k:1,]),axes=F,col=couleurs,zlim=range(ticks)) for(i in 1:n) for(j in 1:k) if(!is.na(coeff[j,i])) { if(pval[j,i]<.01) symb = 'green' else if( (pval[j,i]<.05) & (pval[j,i]>=.01)) symb = 'orange' else if( (pval[j,i]<.1) & (pval[j,i]>=.05)) symb = 'red' else symb = 'black' polygon(c(i+.5 ,i+.2 ,i+.5 ,i+.5), c(k-j+0.5,k-j+0.5,k-j+0.8,k-j+0.5), col=symb) if(j==choix) { rect(xleft=i-.5, xright=i+.5, ybottom=k-j+1.5, ytop=k-j+.5, lwd=4) text(i, k-j+1, round(coeff[j,i],2), cex=1.2, font=2) } else{ rect(xleft=i-.5,xright=i+.5,ybottom=k-j+1.5,ytop=k-j+.5) text(i,k-j+1,round(coeff[j,i],2),cex=1.2,font=1) } } axis(3,1:n,noms) par(mar=c(0.5,0,0,0.5)) plot(0,axes=F,xlab='',ylab='',type='n',xlim=c(0,8),ylim=c(-.2,.8)) cols <- c('green','orange','red','black') niv <- c('0','0.01','0.05','0.1') for(i in 0:3){ polygon(c(1+2*i ,1+2*i ,1+2*i-.5 ,1+2*i), c(.4 ,.7 , .4 , .4), col=cols[i+1]) text(2*i,0.5,niv[i+1],cex=1.5) } text(8,.5,1,cex=1.5) text(4,0,'p-value',cex=2) box() residus <- arimaSelect.out[[3]][[choix]]$res par(mar=c(1,2,4,1)) acf(residus,main='') title('acf',line=.5) par(mar=c(1,2,4,1)) pacf(residus,main='') title('pacf',line=.5) par(mar=c(2,2,4,1)) qqnorm(residus,main='') title('qq-norm',line=.5) qqline(residus) residus } if (par2 == 0) x <- log(x) if (par2 != 0) x <- x^par2 (selection <- arimaSelect(x, order=c(par6,par3,par7), seasonal=list(order=c(par8,par4,par9), period=par5))) bitmap(file='test1.png') resid <- arimaSelectplot(selection) dev.off() resid bitmap(file='test2.png') acf(resid,length(resid)/2, main='Residual Autocorrelation Function') dev.off() bitmap(file='test3.png') pacf(resid,length(resid)/2, main='Residual Partial Autocorrelation Function') dev.off() bitmap(file='test4.png') cpgram(resid, main='Residual Cumulative Periodogram') dev.off() bitmap(file='test5.png') hist(resid, main='Residual Histogram', xlab='values of Residuals') dev.off() bitmap(file='test6.png') densityplot(~resid,col='black',main='Residual Density Plot', xlab='values of Residuals') dev.off() bitmap(file='test7.png') qqnorm(resid, main='Residual Normal Q-Q Plot') qqline(resid) dev.off() ncols <- length(selection[[1]][1,]) nrows <- length(selection[[2]][,1])-1 load(file='createtable') a<-table.start() a<-table.row.start(a) a<-table.element(a,'ARIMA Parameter Estimation and Backward Selection', ncols+1,TRUE) a<-table.row.end(a) a<-table.row.start(a) a<-table.element(a,'Iteration', header=TRUE) for (i in 1:ncols) { a<-table.element(a,names(selection[[3]][[1]]$coef)[i],header=TRUE) } a<-table.row.end(a) for (j in 1:nrows) { a<-table.row.start(a) mydum <- 'Estimates (' mydum <- paste(mydum,j) mydum <- paste(mydum,')') a<-table.element(a,mydum, header=TRUE) for (i in 1:ncols) { a<-table.element(a,round(selection[[1]][j,i],4)) } a<-table.row.end(a) a<-table.row.start(a) a<-table.element(a,'(p-val)', header=TRUE) for (i in 1:ncols) { mydum <- '(' mydum <- paste(mydum,round(selection[[2]][j,i],4),sep='') mydum <- paste(mydum,')') a<-table.element(a,mydum) } a<-table.row.end(a) } a<-table.end(a) table.save(a,file='mytable.tab') a <-table.start() a <- table.row.start(a) a <- table.element(a,'Menu of Residual Diagnostics',2,TRUE) a <- table.row.end(a) a <- table.row.start(a) a <- table.element(a,'Description',1,TRUE) a <- table.element(a,'Link',1,TRUE) a <- table.row.end(a) a <- table.row.start(a) a <-table.element(a,'Histogram',1,header=TRUE) a <- table.element(a,hyperlink( paste('https://supernova.wessa.net/rwasp_histogram.wasp?convertgetintopost=1&data=',paste(as.character(resid),sep='',collapse=' '),sep='') ,'Compute','Click here to examine the Residuals.'),1) a <- table.row.end(a) a <- table.row.start(a) a <-table.element(a,'Central Tendency',1,header=TRUE) a <- table.element(a,hyperlink( paste('https://supernova.wessa.net/rwasp_centraltendency.wasp?convertgetintopost=1&data=',paste(as.character(resid),sep='',collapse=' '),sep='') ,'Compute','Click here to examine the Residuals.'),1) a <- table.row.end(a) a <- table.row.start(a) a <-table.element(a,'QQ Plot',1,header=TRUE) a <- table.element(a,hyperlink( paste('https://supernova.wessa.net/rwasp_fitdistrnorm.wasp?convertgetintopost=1&data=',paste(as.character(resid),sep='',collapse=' '),sep='') ,'Compute','Click here to examine the Residuals.'),1) a <- table.row.end(a) a <- table.row.start(a) a <-table.element(a,'Kernel Density Plot',1,header=TRUE) a <- table.element(a,hyperlink( paste('https://supernova.wessa.net/rwasp_density.wasp?convertgetintopost=1&data=',paste(as.character(resid),sep='',collapse=' '),sep='') ,'Compute','Click here to examine the Residuals.'),1) a <- table.row.end(a) a <- table.row.start(a) a <-table.element(a,'Skewness/Kurtosis Test',1,header=TRUE) a <- table.element(a,hyperlink( paste('https://supernova.wessa.net/rwasp_skewness_kurtosis.wasp?convertgetintopost=1&data=',paste(as.character(resid),sep='',collapse=' '),sep='') ,'Compute','Click here to examine the Residuals.'),1) a <- table.row.end(a) a <- table.row.start(a) a <-table.element(a,'Skewness-Kurtosis Plot',1,header=TRUE) a <- table.element(a,hyperlink( paste('https://supernova.wessa.net/rwasp_skewness_kurtosis_plot.wasp?convertgetintopost=1&data=',paste(as.character(resid),sep='',collapse=' '),sep='') ,'Compute','Click here to examine the Residuals.'),1) a <- table.row.end(a) a <- table.row.start(a) a <-table.element(a,'Harrell-Davis Plot',1,header=TRUE) a <- table.element(a,hyperlink( paste('https://supernova.wessa.net/rwasp_harrell_davis.wasp?convertgetintopost=1&data=',paste(as.character(resid),sep='',collapse=' '),sep='') ,'Compute','Click here to examine the Residuals.'),1) a <- table.row.end(a) a <- table.row.start(a) a <-table.element(a,'Bootstrap Plot -- Central Tendency',1,header=TRUE) a <- table.element(a,hyperlink( paste('https://supernova.wessa.net/rwasp_bootstrapplot1.wasp?convertgetintopost=1&data=',paste(as.character(resid),sep='',collapse=' '),sep='') ,'Compute','Click here to examine the Residuals.'),1) a <- table.row.end(a) a <- table.row.start(a) a <-table.element(a,'Blocked Bootstrap Plot -- Central Tendency',1,header=TRUE) a <- table.element(a,hyperlink( paste('https://supernova.wessa.net/rwasp_bootstrapplot.wasp?convertgetintopost=1&data=',paste(as.character(resid),sep='',collapse=' '),sep='') ,'Compute','Click here to examine the Residuals.'),1) a <- table.row.end(a) a <- table.row.start(a) a <-table.element(a,'(Partial) Autocorrelation Plot',1,header=TRUE) a <- table.element(a,hyperlink( paste('https://supernova.wessa.net/rwasp_autocorrelation.wasp?convertgetintopost=1&data=',paste(as.character(resid),sep='',collapse=' '),sep='') ,'Compute','Click here to examine the Residuals.'),1) a <- table.row.end(a) a <- table.row.start(a) a <-table.element(a,'Spectral Analysis',1,header=TRUE) a <- table.element(a,hyperlink( paste('https://supernova.wessa.net/rwasp_spectrum.wasp?convertgetintopost=1&data=',paste(as.character(resid),sep='',collapse=' '),sep='') ,'Compute','Click here to examine the Residuals.'),1) a <- table.row.end(a) a <- table.row.start(a) a <-table.element(a,'Tukey lambda PPCC Plot',1,header=TRUE) a <- table.element(a,hyperlink( paste('https://supernova.wessa.net/rwasp_tukeylambda.wasp?convertgetintopost=1&data=',paste(as.character(resid),sep='',collapse=' '),sep='') ,'Compute','Click here to examine the Residuals.'),1) a <- table.row.end(a) a <- table.row.start(a) a <-table.element(a,'Box-Cox Normality Plot',1,header=TRUE) a <- table.element(a,hyperlink( paste('https://supernova.wessa.net/rwasp_boxcoxnorm.wasp?convertgetintopost=1&data=',paste(as.character(resid),sep='',collapse=' '),sep='') ,'Compute','Click here to examine the Residuals.'),1) a <- table.row.end(a) a <- table.row.start(a) a <- table.element(a,'Summary Statistics',1,header=TRUE) a <- table.element(a,hyperlink( paste('https://supernova.wessa.net/rwasp_summary1.wasp?convertgetintopost=1&data=',paste(as.character(resid),sep='',collapse=' '),sep='') ,'Compute','Click here to examine the Residuals.'),1) a <- table.row.end(a) a<-table.end(a) table.save(a,file='mytable7.tab')
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