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Data X:
112 118 132 129 121 135 148Stations 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 Water depth (m) 1.5 1.0 0.8 0.5 1.5 1.0 0.5 0.9 0.5 0.5 0.5 2.0 1.5 1.0 0.8 0.5 1.5 1.0 0.5 0.9 0.5 0.5 0.5 2.0 2.0 FORAMINIERA SPECIES A R A R A R A R A R A R A R A R A R A R A R A R A R A R A R A R A R A R A R A R A R A R A R A R A R Ammonia beccarii 0 0 0 0 0 0 0 0 1 20 0 0 2 11 0 0 0 0 0 0 0 0 0 0 0 0 2.0 3 3 13 0 0 2 4 2 5 2 9.5 0 0 0 0 0 0 0 0 0 0 0 0 Ammonia dentata 0 0 0 0 0 0 0 0 0 0 0 0 1 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22 24 0 0 0 0 Ammonia parkinsioniana 5 17 120 48 8 15 70 64 0 0 0 0 7 39 0 0 0 0 65 96 21 81 2 5 10 36 15 23 11 46 0 0 27 56 11 30 13 61.9 14 18 0 0 0 0 0 0 176 60 10 20 Ammonia tepida 0 0 100 40 0 0 38 35 4 80 2 6 6 33 0 0 0 0 0 0 4 15 5 14 5 18 13 20 7 29 6 13 17 35 2 5 3 14.3 30 38 0 0 0 0 0 0 100 34 15 31 Asterorotalia pulchella 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42 45 0 0 1 2 Cibicides lobatula 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Elphidium crispum 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 4 0 0 0 0 Elphidium excavatum 1 3 0 0 0 0 0 0 0 0 0 0 1 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 2 9.5 1 1 0 0 0 0 0 0 0 0 0 0 Elphidium hispidulum 0 0 0 0 1 2 0 0 0 0 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 1 1 0 0 0 0 0 0 1 0.3 0 0 Elphidium poeyanum 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 8 0 0 0 0 Elphidium macellum 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Hauverina circinata 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 3 0 0 0 0 1 3 0 0 0 0 0 0 0 0 Miliolinella cirucularis 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 Miliolinella subrotunda 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 5 0 0 2 3 0 0 0 0 1 1 0 0 0 0 Lobatula lobatula 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 4 0 0 0 0 Nonion scaphum 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Nonion grateloupi 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 3 1 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Pyrgo depressa 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 44 10 20 0 0 0 0 4 11 0 0 0 0 0 0 0 0 0 0 5 14 0 0 0 0 3 9 0 0 0 0 0 0 0 0 Pararotalia nipponica 1 3 0 0 3 6 0 0 0 0 1 3 0 0 0 0 1.0 2 0 0 0 0 1 3 1 4 12 19 0 0 1 2 0 0 3 8 0 0 2 3 1 3 0 0 0 0 0 0 0 0 Peneroplis pertusus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1.0 2 0 0 0 0 4 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Quinqueloculina amygdaloides 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 Quinqueloculina berthelotiana 0 0 0 0 3 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 3 0 0 0 0 1 1 0 0 0 0 Quinqueloculina boueana 0 0 0 0 2 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 5 0 0 0 0 0 0 0 0 0 0 2 3 0 0 0 0 0 0 0 0 0 0 Quinqueloculina lata 0 0 22 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2.0 5 0 0 10 16 0 0 0 0 1 2 0 0 1 4.8 0 0 0 0 0 0 0 0 15 5 16 33 Quinqueloculina laevigata 0 0 0 0 2 4 0 0 0 0 2 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 4 0 0 1 3 0 0 10 13 0 0 0 0 2 2 0 0 1 2 Quinqueloculina lamarckiana 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 3 0 0 0 0 0 0 0 0 0 0 2 3 0 0 0 0 0 0 0 0 0 0 Quinqueloculina oblonga 1 3 0 0 0 0 0 0 0 0 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Quinqueloculina spp. 0 0 0 0 0 0 0 0 0 0 0 0 1 6 1 11 1 2 1 1 0 0 0 0 0 0 2 3 0 0 1 2 0 0 0 0 0 0 2 3 0 0 0 0 8 9 0 0 0 0 Quinqueloculina stelligera 0 0 0 0 3 6 0 0 0 0 0 0 0 0 4 44 30 61 0 0 0 0 14 38 4 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 Quinqueloculina stalkeri 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 5 0 0 2 3 0 0 0 0 1 1 0 0 0 0 Quinqueloculina seminulum 0 0 0 0 0 0 0 0 0 0 4 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 4 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 2 4 Quinqueloculina tropicalis 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 3 4 0 0 0 0 0 0 0 0 0 0 Quinqueloculina vensusta 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Rosalina globularis 0 0 0 0 0 0 0 0 0 0 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 3 0 0 0 0 0 0 0 0 0 0 2 3 0 0 0 0 0 0 0 0 1 2 Spiroloculina communis 2 7 0 0 11 20 0 0 0 0 10 32 0 0 0 0 0 0 0 0 0 0 3 8 4 14 0 0 0 0 1 2 0 0 2 5 0 0 1 1 1 3 0 0 0 0 0 0 0 0 Spiroloculina depressula 12 40 0 0 5 9 0 0 0 0 4 13 0 0 0 0 4 8 0 0 0 0 0 0 4 14 1 2 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 Spiroloculina orbis 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Triloculina rupertiana 6 20 0 0 13 24 0 0 0 0 5 16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 16 0 0 0 0 26 81 0 0 0 0 0 0 0 0 Triloculina terquemiana 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 2 8 32 70 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 Trochammina rotaliformis 0 0 10 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0.7 0 0 Total Foraminifera Number (TFN) 30 100 252 100 54 100 110 100 5 100 31 100 18 100 9 100 49 100 68 100 26 100 37 100 28 100 64 100 24 100 46 100 48 100 37 100 21 100 78 100 32 100 0 0 93 100 294 100 49 100 Species richness 9 4 0 13 0 3 0 2 0 10 0 6 0 3 0 7 0 3 0 3 0 9 0 6 0 12 0 4 0 7 0 5 0 11 0 5 0 17 0 5 0 0 0 11 0 5 0 10 0 148 136 119 104 118 115 126 141 135 125 149 170 170 158 133 114 140 145 150 178 163 172 178 199 199 184 162 146 166 171 180 193 181 183 218 230 242 209 191 172 194 196 196 236 235 229 243 264 272 237 211 180 201 204 188 235 227 234 264 302 293 259 229 203 229 242 233 267 269 270 315 364 347 312 274 237 278 284 277 317 313 318 374 413 405 355 306 271 306 315 301 356 348 355 422 465 467 404 347 305 336 340 318 362 348 363 435 491 505 404 359 310 337 360 342 406 396 420 472 548 559 463 407 362 405 417 391 419 461 472 535 622 606 508 461 390 432
Names of X columns:
total forameniferal no
Metric


Method


Number of parameters in Lance-Williams formula


alpha 1 (Lance-Williams formula)


alpha 2 (Lance-Williams formula)


beta (Lance-Williams formula)


gamma (Lance-Williams formula)


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R Code
par3 <- as.numeric(par3) par4 <- as.numeric(par4) par5 <- as.numeric(par5) par6 <- as.numeric(par6) par7 <- as.numeric(par7) library(cluster) if (par2 == 'flexible') { if (par3 == 1) pm <- c(par4) if (par3 == 3) pm <- c(par4,par5,par6) if (par3 == 4) pm <- c(par4,par5,par6,par7) ag <- agnes(t(y),metric=par1,method=par2,par.method=pm) } else { ag <- agnes(t(y),metric=par1,method=par2) } mysub <- paste('Method: ',par2) summary(ag) bitmap(file='test1.png') plot(ag,which.plots=2,main=main,sub=mysub,xlab=xlab,ylab=ylab) dev.off() bitmap(file='test2.png') plot(ag,which.plots=1,main='Banner',sub=mysub,xlab=ylab,ylab=xlab) dev.off() load(file='createtable') a<-table.start() a<-table.row.start(a) a<-table.element(a,'Agglomerative Nesting (Hierarchical Clustering)',2,TRUE) a<-table.row.end(a) a<-table.row.start(a) a<-table.element(a,'Agglomerative Coefficient',header=TRUE) a<-table.element(a,ag$ac) a<-table.row.end(a) a<-table.end(a) table.save(a,file='mytable.tab')

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R Framework error message	Warning: there are blank lines in the 'Data' field. Please, use NA for missing data - blank lines are simply deleted and are NOT treated as missing values.